Bayır, E., Öz, Y. E., Bingül, N. D., Şendemir, A., Aydoğdu, S., Kaya-Biçer, E., & Hameş, E. E. (2025). Micro-computed tomography (Micro-CT) analysis in assessing the pore structure of hydroxyapatite-functionalized bacterial cellulose for bone tissue engineering. Journal of Porous Materials, 32(2), 563-572.

Kilic, K. D., Erisik, D., Taskiran, D., Turhan, K., Kose, T., Cetin, E. O., ... & Uyanikgil, Y. (2024). Protective effects of E-CG-01 (3, 4-lacto cycloastragenol) against bleomycin-induced lung fibrosis in C57BL/6 mice. Biomedicine & Pharmacotherapy, 177, 117016.

Öz, Y. E., Bingül, N. D., Morçimen, Z. G., Şendemir, A., & Hameş, E. E. (2024). Fabrication of porous bone scaffolds using degradable and mouldable bacterial cellulose. Cellulose, 31(5), 2921-2935.

Namli, E. M., & Sendemir, A. (2024). Biomimetic approaches to the design of smart textiles. In Smart Textiles from Natural Resources (pp. 471-492). Woodhead Publishing.

Tasdemir, S., Morçimen, Z. G., Doğan, A. A., Gorgun, C., & Sendemir, A. (2023). Surface area of graphene governs its neurotoxicity. ACS Biomaterials Science & Engineering, 9(6), 3297-3305.

​Battaloğlu, E., Morçimen, Z. G., & Şendemir, A. (2023). Comparison of the Glio-protective effects of bioplolymer coated eletrospun scaffolds.  Hacettepe Journal of Biology and Chemistry, 51(4), 327-340.

Kumoglu, G. O., Sendemir, A., Tanyolac, M. B., Bilir, B., Kucuk, O., & Missirlis, Y. F. (2022). Epigenetic mechanisms in cancer. Longhua Chinese Medicine, 5.

Bilgi, E., Homan Gokce, E., Bayir, E., Sendemir, A., Ozer, K. O., & Hames Tuna, E. E. (2021). Bacterial cellulose based facial mask with antioxidant property and high moisturizing capacity. Cellulose, 28, 10399-10414.

Bayir, E., & Sendemir, A. (2021). In vitro human blood-brain barrier model for drug permeability testing. Permeability Barrier: Methods and Protocols, 73-85.

​Özyurt, M. G., Bayir, E., DoĞan, Ş., ÖztÜrk, Ş., & Şendemİr, A. (2020). Coculture model of blood-brain barrier on electrospun nanofibers. Turkish Journal of Biology, 44(4), 121-132.

Bayir, E., & Sendemir, A. (2021). Role of intermediate filaments in blood–brain barrier in health and disease. Cells, 10(6), 1400.

​Topuzoglu, T., Köktürk, G., Altun, D. A., Sendemir, A., Cakır, O. A., Tokuc, A., & Ozkaban, F. A. (2019, December). Finding the shortest paths in Izmir map by using slime molds images. In 2019 International Conference on Control, Artificial Intelligence, Robotics & Optimization (ICCAIRO) (pp. 202-206). IEEE.

Bayir, E., Celtikoglu, M. M., & Sendemir, A. (2019). The use of bacterial cellulose as a basement membrane improves the plausibility of the static in vitro blood-brain barrier model. International journal of biological macromolecules, 126, 1002-1013.

Morçimen, Z. G., Taşdemir, Ş., Erdem, Ç., Güneş, F., & Şendemir, A. (2019). Investıgatıon of the Adherence and Prolıferatıon Characterıstıcs of SH-SY5Y Neuron Model Cells on Graphene Foam Surfaces. Materials Today: Proceedings, 19, 40-46.

Ürkmez, A. Ş., Seçkin, U. D., Görgün, C., & Uyanıkgil, Y. (2018). Deri doku mühendisliği amaçlı üç boyutlu biyobaskı ve keratinosit kültürü. Dicle Tıp Dergisi, 45(1), 9-14.

Cay, A., Akçakoca Kumbasar, E. P., Keskin, Z., Akduman, Ç., & Şendemir Ürkmez, A. (2017). Crosslinking of poly (vinyl alcohol) nanofibres with polycarboxylic acids: biocompatibility with human skin keratinocyte cells. Journal of Materials Science, 52(20), 12098-12108.

Unalan, I., Colpankan, O., Albayrak, A. Z., Gorgun, C., & Urkmez, A. S. (2016). Biocompatibility of plasma-treated poly (3-hydroxybutyrate-co-3-hydroxyvalerate) nanofiber mats modified by silk fibroin for bone tissue regeneration. Materials Science and Engineering: C, 68, 842-850.

Kımız, I., Zeybek, B., Bektaş, C., Hasırcı, V. N., Hasırcı, N., & Şendemir Ürkmez, A. (2015). Collagen Chondroitin Sulfate and Carboxymethyl Cellulose Bilayered Scaffolds for Skin Tissue Engineering Applications.

Bektaş, C., Kımız, I., Şendemir Ürkmez, A., Hasırcı, V. N., & Hasırcı, N. (2015). Collagen and Carboxymethyl Cellulose Bilayers for Skin Tissue Repair.

Avşar, G., Zeybek, B., & Şendemir-Ürkmez, A. (2014, October). Investigation of chemoattractant properties of various molecules in three-dimensional microenvironment to metastasis of breast cancer cells to bone. In 2014 18th National Biomedical Engineering Meeting (pp. 1-3). IEEE.

Özyurt, M. G., Doğan, Ş., Öztürk, Ş., Gürhan, S. İ. D., & Ürkmez, A. Ş. (2014, October). Engineering design of in vitro mono-culture model of blood-brain barrier and investigation of methotrexate permeability on the model. In 2014 18th National Biomedical Engineering Meeting (pp. 1-4). IEEE.

Ozdemir, E., Sendemir-Urkmez, A., & Yesil-Celiktas, O. (2013). Supercritical CO2 processing of a chitosan-based scaffold: Can implantation of osteoblastic cells be enhanced?. The Journal of Supercritical Fluids, 75, 120-127.

Nesil, T., Ürkmez, A. Ş., & Bedir, E. (2011). Protective effects of astragaloside IV and cycloastragenol in 6-hydroxydopamin (6-ohda)-induced neurotoxicity in PC12 cells. Planta Medica, 77(12), PM177.

Urkmez, A. S., Clark, S. G., Wheeler, M. B., Goldwasser, M. S., & Jamison, R. D. (2008, August). Evaluation of chitosan/biphasic calcium phosphate scaffolds for maxillofacial bone tissue engineering. In Macromolecular symposia (Vol. 269, No. 1, pp. 100-105). Weinheim: WILEY‐VCH Verlag.

Sendemir-Urkmez, A. (2006). Design and application of chitosan/biphasic calcium phosphate porous scaffolds for bone tissue engineering. Ph. D. Thesis.

Tan, W., Fahrner, L. J., Sendemir-Urkmez, A., Jamison, R. D., Leckband, D. E., & Boppart, S. A. (2004, April). Multi-modality three-dimensional optical imaging of engineered tissues. In Biomedical Topical Meeting (p. FA3). Optica Publishing Group.

Günüç, S., & Şendemir, A. Beyin ve Bağırsak Mikrobiyotası Arasındaki İlişkinin Bilişsel, Duygusal, Davranışsal ve Fizyolojik Açıdan Değerlendirilmesi.

Kendirci-Katirci, R., Sendemir, A., Hameş, E. E., & Vatansever, H. S. (2025). The role of Collagen Tissue Scaffolds in 3D Endometrial-like Culture Systems: Important Contributions to Cell Invasion and Cell Topography. Reproductive Sciences, 1-12.

Bayraktar, G., Bartolini, M., Bolognesi, M. L., Erdoğan, M. A., Armağan, G., Bayır, E., ... & Alptüzün, V. (2024). Novel multifunctional tacrine–donepezil hybrids against Alzheimer's disease: Design synthesis and bioactivity studies. Archiv der Pharmazie, 357(7), 2300575.

Kuru, C. İ., Ulucan-Karnak, F., Dayıoğlu, B., Şahinler, M., Şendemir, A., & Akgöl, S. (2024). Affinity-Based Magnetic Nanoparticle Development for Cancer Stem Cell Isolation. Polymers, 16(2), 196.

Morçimen, Z. G., Taşdemir, Ş., & Şendem, A. (2024). In vitro engineered models of neurodegenerative diseases. Biocell, 48(1).

Kale, İ., Kırdök, O., Bilgi, E., Akyol-Altun, T. D., Tokuç, A., Köktürk, G., ... & Hameş, E. E. (2023). Potential of bacterial cellulose for sustainable cities: A review and bibliometric analysis on bacterial cellulose. A sustainable green future: perspectives on energy, economy, industry, cities and environment, 329-357.

Günüç, S., & Şendemir, A. (2022). Cognitive, emotional, behavioral and physiological evaluation of the relationship between brain and gut microbiota. Psikiyatride Güncel Yaklaşımlar, 14(4), 446-459.

Rethinam, S., Kavukcu, S. B., Hemalatha, T., Aruni, A. W., Sendemir, A., & Türkay, C. (2022). Cellulose based electrospun nanofilters: perspectives on tannery effluent waste water treatment. Cellulose, 29(3), 1969-1980.

Bayir, E., & Sendemir, A. (2021). Role of intermediate filaments in blood–brain barrier in health and disease. Cells, 10(6), 1400.

Gunes, O. C., Albayrak, A. Z., Tasdemir, S., & Sendemir, A. (2020). Wet-electrospun PHBV nanofiber reinforced carboxymethyl chitosan-silk hydrogel composite scaffolds for articular cartilage repair. Journal of biomaterials applications, 35(4-5), 515-531.

Bayir, E., Sahinler, M., Celtikoglu, M. M., & Sendemir, A. (2020). Bioreactors in tissue engineering: Mimicking the microenvironment. In Biomaterials for Organ and Tissue Regeneration (pp. 709-752). Woodhead Publishing.

Bayir, E., Bilgi, E., Hames, E. E., & Sendemir, A. (2019). Production of hydroxyapatite–bacterial cellulose composite scaffolds with enhanced pore diameters for bone tissue engineering applications. Cellulose, 26, 9803-9817.

Bayir, E., Sendemir, A., & Missirlis, Y. F. (2019). Mechanobiology of cells and cell systems, such as organoids. Biophysical reviews, 11, 721-728.

Bayar, S., Taşdemir, Ş., Kayhan, B., Şendemir, A., & Şengül, G. (2019). Investigation of the neuroprotective effect of humanin in an in vitro Parkinson's disease model. Anatomy: International Journal of Experimental & Clinical Anatomy, 13.

Kilic Bektas, C., Kimiz, I., Sendemir, A., Hasirci, V., & Hasirci, N. (2018). A bilayer scaffold prepared from collagen and carboxymethyl cellulose for skin tissue engineering applications. Journal of Biomaterials Science, Polymer Edition, 29(14), 1764-1784.

Anil, M., Ayyildiz-Tamis, D., Tasdemir, S., Sendemir-Urkmez, A., & Gulce-Iz, S. (2018). Bioinspired materials and biocompatibility. In Biomedical Engineering: Concepts, Methodologies, Tools, and Applications (pp. 1071-1100). IGI Global.

Keskin, Z., Urkmez, A. S., & Hames, E. E. (2017). Novel keratin modified bacterial cellulose nanocomposite production and characterization for skin tissue engineering. Materials Science and Engineering: C, 75, 1144-1153.

Gorgun, C., Ozturk, S., Gokalp, S., Vatansever, S., Gurhan, S. I. D., & Urkmez, A. S. (2016). Synergistic role of three dimensional niche and hypoxia on conservation of cancer stem cell phenotype. International journal of biological macromolecules, 90, 20-26.

Bektaş, C., Kımız, I., Şendemir Ürkmez, A., & Hasırcı, V. N. (2015). NaCMC and Collagen Bilayer Scaffolds for Skin Tissue Engineering.

Bayır, E., Bilgi, E., Şendemir-Ürkmez, A., & Hameş-Kocabaş, E. E. (2015). The effects of different intensities, frequencies and exposure times of extremely low-frequency electromagnetic fields on the growth of Staphylococcus aureus and Escherichia coli O157: H7. Electromagnetic biology and medicine, 34(1), 14-18.

Öztürk, S., Aydın, V. K., Karakuzu, B., & Şendemir-Ürkmez, A. (2014, October). Investigation of cell localisation pattern in 3 dimensional micro-tissues. In 2014 18th National Biomedical Engineering Meeting (pp. 1-4). IEEE.

Zeybek, B., Duman, M., Şendemir A. (2014). Electrospinning of nanofibrous polycaprolactone (PCL) and collagen-blended polycaprolactone for wound dressing and tissue engineering. Usak University Journal of Material Sciences, 3(1), 121-134.

Nesil, T., Olcum, M., Koylu, E. O., Gurhan, I. D., & Urkmez, A. S. (2011, October). Culture of central nervous system neurons on electrospun polymer fiber-covered surfaces. In 2011 10th International Workshop on Biomedical Engineering (pp. 1-4). IEEE.

Yavuz, Ş. U., Şendemir-Ürkmez, A., & Türker, K. S. (2010). Effect of gender, age, fatigue and contraction level on electromechanical delay. Clinical Neurophysiology, 121(10), 1700-1706.

Sendemir‐Urkmez, A., & Jamison, R. D. (2007). The addition of biphasic calcium phosphate to porous chitosan scaffolds enhances bone tissue development in vitro. Journal of Biomedical Materials Research Part A, 81(3), 624-633.

​Griffon, D. J., Sedighi, M. R., Sendemir-Urkmez, A., Stewart, A. A., & Jamison, R. (2005). Evaluation of vacuum and dynamic cell seeding of polyglycolic acid and chitosan scaffolds for cartilage engineering. American Journal of Veterinary Research, 66(4), 599-605.

Sendemir, A., & Altintas, S. (1998, May). Production of hydroxylapatite reinforced polymer composites for biomedical applications. In Proceedings of the 1998 2nd International Conference Biomedical Engineering Days (pp. 114-117). IEEE.

Ürkmez, A. Ş., & Jamison, R. D. Basic Fibroblast Growth Factor Retains Its Biological Activity In Vitro When Delivered Through Degradation of Gelatin Microspheres. International Journal of Engineering, Technology and Natural Sciences, (3), 65-70.

Tanriverdi, S. T., Gokce, E. H., Sušanj, I., Simić, L., Vukelić, K., Knežević, Z., ... & Ozer, O. (2024). Comprehensive evaluation of xylometazoline hydrochloride formulations: Ex-vivo and in-vitro studies. European Journal of Pharmaceutics and Biopharmaceutics, 203, 114466.

Aslanbay Guler, B., Morçimen, Z. G., Taşdemir, Ş., Demirel, Z., Turunç, E., Şendemir, A., & Imamoglu, E. (2024). Design of chemobrionic and biochemobrionic scaffolds for bone tissue engineering. Scientific Reports, 14(1), 13764.

Tayhan, S. E., Şendemir, A., Mir, E., & Gürhan, İ. D. Construction of Mesenchymal Stem Cell-Derived Artificial Human Urinary Bladder: A Preliminary Study. Online Turkish Journal of Health Sciences, 9(1), 66-72.

Moyo, M. T. G., Adali, T., Edebal, O. H., Bayir, E., & Şendemir, A. (2023). Hemocompatibility studies of layer-by-layer polyelectrolyte complexes for bio-based polymers. Materials and Technology, 57(5), 525-536.

Morcimen, Z. G., Gulicli, B., & Sendemir, A. (2024). Dynamic models for investigating structure/function of biomaterials: bioreactors. In Multiscale Cell-Biomaterials Interplay in Musculoskeletal Tissue Engineering and Regenerative Medicine (pp. 335-376). Academic Press.

Bingül, N. D., Öz, Y. E., Şendemir, A., & Hameş, E. E. (2022). Microbial biopolymers in articular cartilage tissue engineering. Journal of Polymer Research, 29(8), 334.

Kırdök, O., Altun, D. A., Dahy, H., Strobel, L., Tuna, E. E. H., Köktürk, G., ... & Şendemir, A. (2022). Design studies and applications of mycelium biocomposites in architecture. In Biomimicry for materials, design and habitats (pp. 489-527). Elsevier.

Akbülbül, Ö., Şener, M., Özdemir, G., Şendemir, A., Bayır, E., Goksel, T., ... & Baltacı, A. (2021). Manyetik Kateter Yönlendirme Sistemleri. Celal Bayar Üniversitesi Sağlık Bilimleri Enstitüsü Dergisi, 8(2), 358-365.

Ozturk, S., Gorgun, C., Gokalp, S., Vatansever, S., & Sendemir, A. (2020). Development and characterization of cancer stem cell‐based tumoroids as an osteosarcoma model. Biotechnology and bioengineering, 117(8), 2527-2539.

Köktürk, G., Tokuç, A., Altun, T. D., Kale, İ., Özkaban, F. F., Andiç Çakır, Ö., & Şendemir, A. (2020). Experimental and numerical shortest route optimization in generating a design template for a recreation area in Kadifekale. In Environmentally-Benign Energy Solutions (pp. 779-798). Springer International Publishing.

​Seven, F., Gölcez, T., Şahinler, M., Şendemir, A., Karaman, O., & Şen, M. (2019, October). Prolonged Electrical Stimulation of Neuronal PC12 Cells Using a Microchip. In 2019 Medical Technologies Congress (TIPTEKNO) (pp. 1-4). IEEE.

Gündoğdu, T. K., Deniz, I., Aric, A., Yılmazsoy, B. T., Cakir, O. A., Erdogan, A., ... & Ozkaban, F. (2019). Development of ecological biodesign products by bacterial biocalcification. European Journal of Engineering and Natural Sciences, 3(1), 17-25.

Cesur, S., Küçükgöksel, Y., Taşdemir, Ş., & Ürkmez, A. Ş. (2018). Polycaprolactone‐hydroxy apatite composites for tissue engineering applications. Journal of Vinyl and Additive Technology, 24(3), 248-261.

Karaman, O., Celik, C., & Urkmez, A. S. (2018). Self-assembled biomimetic scaffolds for bone tissue engineering. In Biomedical Engineering: Concepts, Methodologies, Tools, and Applications (pp. 476-504). IGI Global.

Ürkmez, A. Ş., Bayir, E., Bilgi, E., & Özen, M. Ö. (2017). Biocompatible polymeric coatings do not inherently reducethe cytotoxicity of iron oxide nanoparticles. Turkish Journal of Biology, 41(2), 322-332.

​Bilgi, E., Bayir, E., Sendemir-Urkmez, A., & Hames, E. E. (2016). Optimization of bacterial cellulose production by Gluconacetobacter xylinus using carob and haricot bean. International journal of biological macromolecules, 90, 2-10.

Keskin, Z., Hameş, E. E., & Şendemir Ürkmez, A. (2016). Bıoengıneerıng As Art.

Suslu, A., Albayrak, A. Z., Bayir, E., Sendemir Urkmez, A., & Cocen, U. (2015). In vitro biocompatibility and antibacterial activity of electrospun Ag doped HAp/PHBV composite nanofibers. International Journal of Polymeric Materials and Polymeric Biomaterials, 64(9), 465-473.

Suslu, A., Albayrak, A. Z., Urkmez, A. S., Bayir, E., & Cocen, U. (2014). Effect of surfactant types on the biocompatibility of electrospun HAp/PHBV composite nanofibers. Journal of Materials Science: Materials in Medicine, 25, 2677-2689.

Duman, O. M., Çelik, C., Sarıkanat, M., & Ürkmez, A. Ş. (2014, October). Investigation of central nervous system neurons under mechanical strain: An in vitro traumatic brain injury model. In 2014 18th National Biomedical Engineering Meeting (pp. 1-4). IEEE.

Ertuğ, M., Üzüm, O., Şendemir Ürkmez, A., & Andiç Çakır, Ö. (2013). Natural polymer-based hydrogel incorporating self healing mortar. Restoration of Buildings and Monuments, 19(2-3), 179-186.

Altas, E., Gurhan, I. D., & Urkmez, A. S. (2011, October). Influence of processing flaws on cytotoxicity and genotoxicity of Co-Cr and Ni-Cr based dental crowns and bridges. In 2011 10th International Workshop on Biomedical Engineering (pp. 1-4). IEEE.

Morgan, A. W., Chan, L. L., Sendemir-Urkmez, A., Cunningham, B. T., & Jamison, R. D. (2010). Detection of growth factor binding to gelatin and heparin using a photonic crystal optical biosensor. Materials Science and Engineering: C, 30(5), 686-690.

Sendemir-Urkmez, A. (2006). Tissue Engineered Bone for Mandibular Reconstruction. Journal of Oral and Maxillofacial Surgery, 64(9), 42-43.

Tan, W., Sendemir-Urkmez, A., Fahrner, L. J., Jamison, R., Leckband, D., & Boppart, S. A. (2004). Structural and functional optical imaging of three-dimensional engineered tissue development. Tissue engineering, 10(11-12), 1747-1756.

Tayhan, S. E., Şendemir, A., Mir, E., & Gürhan, İ. D. Construction of Mesenchymal Stem Cell-Derived Artificial Human Urinary Bladder: A Preliminary Study. Online Turkish Journal of Health Sciences, 9(1), 66-72.